.. orthoflow documentation master file, created by
   sphinx-quickstart on Fri Feb 18 19:07:07 2022.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to Orthoflow's documentation!
=================================================

.. include:: ../../README.rst
   :start-after: start-badges
   :end-before: end-badges

.. image:: https://raw.githubusercontent.com/rbturnbull/orthoflow/master/docs/source/_static/images/orthoflow-banner.svg

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   main/installation
   main/beginner_tutorial
   main/advanced_tutorial
   main/yeast
   main/plant
   main/input
   main/workflow
   main/contributing
   main/citation


Indices and tables
==================

* :ref:`genindex`
* :ref:`smk-rule`
* :ref:`modindex`
* :ref:`search`