Index

Symbols

--curated seqbank-dfam command line option --filter seqbank-add command line option --format seqbank-add command line option seqbank-add-sequence-from-file command line option seqbank-export command line option seqbank-url command line option --install-completion seqbank command line option --max seqbank-histogram command line option seqbank-refseq command line option seqbank-url command line option --min seqbank-histogram command line option --nbins seqbank-histogram command line option

--no-curated seqbank-dfam command line option --no-show seqbank-histogram command line option --output-path seqbank-histogram command line option --release seqbank-dfam command line option --show seqbank-histogram command line option --show-completion seqbank command line option --tmp-dir seqbank-refseq command line option seqbank-url command line option --workers seqbank-refseq command line option seqbank-url command line option

A

ACCESSION seqbank-add-sequence-from-file command line option ACCESSIONS seqbank-delete command line option add() (seqbank.seqbank.SeqBank method)

add_file() (seqbank.seqbank.SeqBank method) add_files() (seqbank.seqbank.SeqBank method) add_sequence_from_file() (seqbank.seqbank.SeqBank method) add_url() (seqbank.seqbank.SeqBank method) add_urls() (seqbank.seqbank.SeqBank method)

C

close() (seqbank.seqbank.SeqBank method)

copy() (seqbank.seqbank.SeqBank method)

D

delete() (seqbank.seqbank.SeqBank method)

E

export() (seqbank.seqbank.SeqBank method)

F

FILE seqbank-add-sequence-from-file command line option

file (seqbank.seqbank.SeqBank property) FILES seqbank-add command line option

G

get_accessions() (seqbank.seqbank.SeqBank method)

H

histogram() (seqbank.seqbank.SeqBank method)

I

items() (seqbank.seqbank.SeqBank method)

K

key() (seqbank.seqbank.SeqBank method)

key_url() (seqbank.seqbank.SeqBank method)

L

lengths_dict() (seqbank.seqbank.SeqBank method)

ls() (seqbank.seqbank.SeqBank method)

M

missing() (seqbank.seqbank.SeqBank method)

N

NEW seqbank-cp command line option

numpy() (seqbank.seqbank.SeqBank method)

O

OUTPUT seqbank-export command line option

P

PATH seqbank-add command line option seqbank-add-sequence-from-file command line option seqbank-count command line option seqbank-cp command line option seqbank-delete command line option seqbank-dfam command line option seqbank-export command line option seqbank-histogram command line option seqbank-ls command line option seqbank-refseq command line option seqbank-url command line option

R

record() (seqbank.seqbank.SeqBank method)

S

save_seen_url() (seqbank.seqbank.SeqBank method) seen_url() (seqbank.seqbank.SeqBank method) SeqBank (class in seqbank.seqbank) seqbank command line option --install-completion --show-completion seqbank-add command line option --filter --format FILES PATH seqbank-add-sequence-from-file command line option --format ACCESSION FILE PATH seqbank-count command line option PATH seqbank-cp command line option NEW PATH seqbank-delete command line option ACCESSIONS PATH seqbank-dfam command line option --curated --no-curated --release PATH

seqbank-export command line option --format OUTPUT PATH seqbank-histogram command line option --max --min --nbins --no-show --output-path --show PATH seqbank-ls command line option PATH seqbank-refseq command line option --max --tmp-dir --workers PATH seqbank-url command line option --format --max --tmp-dir --workers PATH URLS string() (seqbank.seqbank.SeqBank method)

U

URLS seqbank-url command line option