Latest Results
==================================

Terrier v0.4 was released and this was trained on RepBase31.04 (released 04-23-2026)
which as substantially more sequences than the previous version (RepBase29.10)
used to train the version of Terrier for the publication in Briefings in Bioinformatics (2025).

This has altered the performance of the model. See the tables below for the performance of both versions of Terrier on the test data.

Rice
-----

+--------+----------+----------------------------------------------------------+-------------------------------------------------------------------------+
|        |          | Order                                                    | Superfamily                                                             |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| Version| Threshold| Proportion Classified             | Accuracy             | Proportion Classified                    | Accuracy                     |
+========+==========+===================================+======================+==========================================+==============================+
| v0.3   | 0.7      | 94.7%                             | 94.4%                | 90.7%                                    | 98.5%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.4   | 0.7      | 97.3%                             | 94.5%                | 92.0%                                    | 98.6%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.3   | 0.9      | 90.7%                             | 97.1%                | 89.3%                                    | 98.5%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.4   | 0.9      | 93.3%                             | 98.6%                | 90.7%                                    | 100.0%                       |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+


Fruit Fly
----------

+--------+----------+----------------------------------------------------------+-------------------------------------------------------------------------+
|        |          | Order                                                    | Superfamily                                                             |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| Version| Threshold| Proportion Classified             | Accuracy             | Proportion Classified                    | Accuracy                     |
+========+==========+===================================+======================+==========================================+==============================+
| v0.3   | 0.7      | 80.8%                             | 87.9%                | 63.6%                                    | 91.0%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.4   | 0.7      | 81.6%                             | 88.6%                | 66.0%                                    | 91.8%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.3   | 0.9      | 65.4%                             | 94.5%                | 53.7%                                    | 96.6%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.4   | 0.9      | 67.3%                             | 93.1%                | 53.7%                                    | 96.4%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+


Human
-----

+--------+----------+----------------------------------------------------------+-------------------------------------------------------------------------+
|        |          | Order                                                    | Superfamily                                                             |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| Version| Threshold| Proportion Classified             | Accuracy             | Proportion Classified                    | Accuracy                     |
+========+==========+===================================+======================+==========================================+==============================+
| v0.3   | 0.7      | 85.3%                             | 89.5%                | 75.9%                                    | 92.3%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.4   | 0.7      | 84.2%                             | 89.6%                | 73.0%                                    | 93.3%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.3   | 0.9      | 78.0%                             | 94.4%                | 71.3%                                    | 95.5%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.4   | 0.9      | 76.6%                             | 94.9%                | 68.2%                                    | 96.7%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+


Mouse
-----

+--------+----------+----------------------------------------------------------+-------------------------------------------------------------------------+
|        |          | Order                                                    | Superfamily                                                             |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| Version| Threshold| Proportion Classified             | Accuracy             | Proportion Classified                    | Accuracy                     |
+========+==========+===================================+======================+==========================================+==============================+
| v0.3   | 0.7      | 84.6%                             | 92.1%                | 75.9%                                    | 95.8%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.4   | 0.7      | 84.2%                             | 92.2%                | 74.8%                                    | 95.5%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.3   | 0.9      | 78.5%                             | 95.6%                | 72.2%                                    | 97.5%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+
| v0.4   | 0.9      | 76.6%                             | 96.7%                | 70.2%                                    | 97.9%                        |
+--------+----------+-----------------------------------+----------------------+------------------------------------------+------------------------------+