Welcome to Terrier’s documentation!

Classifier of Repeats

Contents:

• Quickstart
  • Installation
  • Google Colab Version
  • Usage
  • Programmatic Usage
  • Potential Use Case
• Preprocessing
  • Repbase
  • Preprocess
  • Optional: Display the SeqTree
• Training
• Reproduction
  • Fruit Fly Genome
  • Rice Genome
  • Human Genome
  • Mouse Genome
• Test Data Comparison
  • DeepTE
  • TERL
  • TEclass2 (threshold 0.7)
  • TEclass2 (threshold 0.9)
• API Reference
  • Terrier
• Command Line Interface Reference
• Credits

Indices and tables

• Index

• Module Index

• Search Page